Hello Rob and welcome!
I'm really a starter Cheese Maker and only on my 10th cheese making batch, so maybe others here are better able to help than me. That said, I understand that your problem is that your cheese is occasionally not turning out - tasting well as you believe the bacteria are airborne "opportunistic" rather than from the starter culture bacteria you are adding.
Three possibilities I believe:
- Your "Make Room" is not sanitary enough, can you describe it and level of cleanliness & possible airborne contaminants?
- Your starter culture is too weak, either out of date or not enough?
- Your milk is not sanitary before you start, where are you getting yours from?
What type and volume of cheese are you making and roughly what steps would also be helpful, also why do you think it is the bacteria and not a ripening problem (ie too cool or warm, too humid)?
FYI, to give you a reference point, I am using standard household kitchen with medium normal cleanliness, store bought Pasteurized and Homogenized milk and homemade, not store bought, starter cultures using one of the two recipes in the Recipe Board, and todate have not had a problem.